PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK23183.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GRAS
Protein Properties Length: 106aa    MW: 12072.9 Da    PI: 8.0378
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK23183.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS126.72.7e-391105270374
       GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369
                sl+a++p+es +r+kvE+ ++++ei+n+va eg er+erhe+l kWr+ +e  GFk v+ls +a++q k ll  ++ +gyr+ e++g+l+lgW+drpL++
  PK23183.1   1 SLDATFPAESPQRAKVEQYIFAPEIRNIVAYEGPERIERHERLDKWRKLMEGKGFKGVQLSANAVTQSKILLGLYSCEGYRLTEDNGCLLLGWMDRPLIA 100
                799************************************************************************************************* PP

       GRAS 370 vSaWr 374
                +SaWr
  PK23183.1 101 ASAWR 105
                ****8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035149.3E-371105IPR005202Transcription factor GRAS
PROSITE profilePS5098516.408185IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
SLDATFPAES PQRAKVEQYI FAPEIRNIVA YEGPERIERH ERLDKWRKLM EGKGFKGVQL  60
SANAVTQSKI LLGLYSCEGY RLTEDNGCLL LGWMDRPLIA ASAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-131105268375GRAS family transcription factor containing p
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003549053.11e-62PREDICTED: DELLA protein RGL1-like
TrEMBLA0A0R0FYG51e-62A0A0R0FYG5_SOYBN; Uncharacterized protein
TrEMBLK7MFB81e-62K7MFB8_SOYBN; Uncharacterized protein
STRINGGLYMA16G05751.13e-62(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.13e-27scarecrow-like 3